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當前位置:AgriPheno > 分子遺傳與育種 > 超高通量基因分型
AgriPheno超高通量基因分型-分子標記檢測平臺-Nexar
日期:2019-01-24 15:36:00

AgriPheno提供農(nóng)作物重要性狀功能基因定位服務(wù),結(jié)合芯片和高通量測序開發(fā)材料間的SNP位點,并結(jié)合高通量表型測試,提供基因型-表型-育種的整套實驗流程設(shè)計與服務(wù)。


超高通量基因分型-分子標記檢測平臺-Nexar

 

Nexar系統(tǒng)是快速、自動化的內(nèi)聯(lián)儀器,包括Nexar?模塊化內(nèi)聯(lián)液處理與分析系統(tǒng)、Soellex?高通量PCR水浴熱循環(huán)系統(tǒng)和Araya?內(nèi)聯(lián)熒光檢測系統(tǒng),可支持樣本和陣列的高通量處理。Nexar利用創(chuàng)新的ArrayTapeTM(陣列卷帶)系列耗材,能夠在高精確度和準確性下運行。同時配備KASP Array Tape Master mix進行競爭性等位基因特異性PCR,可在廣泛的基因組DNA樣品中,對SNPs和特定位點上的InDels進行精準的雙等位基因分型。

Nexar系統(tǒng)模塊化內(nèi)聯(lián)平臺與Array Tape的設(shè)計實現(xiàn)了基于微孔板技術(shù)的多功能性,并且?guī)缀跸耸謩硬僮骱蛷碗s的儀器操作。這種靈活的微孔板替代品可促進整個實驗室的內(nèi)聯(lián)和整合自動化,并有助于終點PCR,qPCR和終點等溫DNA擴增的應(yīng)用。每個96孔,384孔和768孔陣列都標有獨特的條形碼標簽,確保在處理過程中和加工后準確識別各個樣品。此外,還可提供定制化的陣列,包括RNAse,DNAse和無熱原選項。

 

Nexar 系統(tǒng)

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Nexar?


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Soellex?


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Araya?


                                

?   Nexar?

Nexar作為超高通量解決方案,是一套用于Array Tape(陣列卷帶)樣品和試劑處理的內(nèi)聯(lián)液體處理系統(tǒng)。該儀器提供分裝、密封和源板存儲,以及可選進程,如孵育和脫水。這一靈活的模塊配置可以處理各種應(yīng)用進程。

?   Soellex?

Soellex為三室水浴熱循環(huán)系統(tǒng),能夠在一輪運行中同時熱循環(huán)多達三個Array Tape(陣列卷帶)線軸(230,400個反應(yīng)孔)或152個微孔板(384孔)。

?   Araya?

Araya是內(nèi)聯(lián)熒光檢測系統(tǒng),專為Array Tape(陣列卷帶)的自動掃描而設(shè)計。該系統(tǒng)可作為獨立儀器或Nexar的內(nèi)聯(lián)模塊使用。

?   Intellics?

創(chuàng)新的配套軟件提供集中數(shù)據(jù)管理、儀器監(jiān)控、智能運行優(yōu)化、Protocol生成和簡化數(shù)據(jù)分析。

 

應(yīng)用領(lǐng)域

?   糧食作物:水稻、小麥、玉米、土豆等

?   模式植物:擬南芥、煙草、二穗短柄草等

?   蔬菜作物:生菜、番茄、甜菜、黃瓜、甘藍、菠菜等

?   模式動物:人、小白鼠、斑馬魚等

?   常見牲畜:牛、豬、山羊等

 

應(yīng)用案例


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1 典型的基因分型富集圖

注:每個數(shù)據(jù)點代表一個獨立的DNA樣本的熒光信號,相同基因型的樣本會發(fā)出相似水平的熒光,因此富集在一起。



 服務(wù)項目

?     目標基因/性狀標記開發(fā)

?     全基因組標記開發(fā)

?     遺傳圖譜的構(gòu)建

?     圖位克隆

?     背景篩查

?     蔬菜等純度檢測

?     植物身份鑒定/分群

image.png


 

服務(wù)特點

?     適用于超高通量自動化檢測,液體處理、孵育與檢測等流程一體化

?     反應(yīng)體系微型化,顯著降低單個數(shù)據(jù)點的成本

?     兼容粗提的DNA樣本,并可靈活選用化學試劑

?     專業(yè)化生物信息平臺及團隊

?     大規(guī)模數(shù)據(jù)存儲及數(shù)據(jù)處理服務(wù)器

 

客戶提供

?     基因或指定區(qū)間信息

?     符合要求的供體/受體材料的DNA、葉片或種子等植物組織

 

服務(wù)周期

?     根據(jù)特定序列中變異位點設(shè)計標記:10-25個工作日

?     根據(jù)特定供體與特定回交親本開發(fā):10-20個工作日

?     基因初步定位:30~40個工作日

?     基因精細定位:30~40個工作日

?     已克隆基因序列開發(fā): 15-30個工作日

?     全基因組標記開發(fā):4-6個月

?     未克隆已定位基因標記開發(fā):根據(jù)性狀復雜程度確定


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